Recent Publications

Transcription factor binding specificities of the oomycete Phytophthora infestans reflect conserved and divergent evolutionary patterns and predict function

Jul 23, 2024

BMC genomics

Nguyen N T Vo, Ally Yang, Wiphawee Leesutthiphonchai, Yulong Liu, Timothy R Hughes, Howard S Judelson

Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024

Jul 19, 2024

Journal of integrative bioinformatics

Martin Golebiewski, Gary Bader, Padraig Gleeson, Thomas E Gorochowski, Sarah M Keating, Matthias König, Chris J Myers, David P Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber

Neutrophil depletion for early allogeneic islet survival in a methacrylic acid (MAA) copolymer-induced, vascularized subcutaneous space

Jul 12, 2024

Frontiers in transplantation

So-Yoon Won, Sean M Kinney, Michael V Sefton

Robust segregation of donor and recipient cells from single-cell RNA-sequencing of transplant samples

Jul 12, 2024

Frontiers in transplantation

Gavin W Wilson, Allen Duong, Sajad Moshkelgosha, Gary Bader, Shaf Keshavjee, Tereza Martinu, Stephen C Juvet, Jonathan C Yeung

An HSF1-JMJD6-HSP feedback circuit promotes cell adaptation to proteotoxic stress

Jul 10, 2024

Proceedings of the National Academy of Sciences of the United States of America

Milad J Alasady, Martina Koeva, Seesha R Takagishi, Dmitri Segal, David R Amici, Roger S Smith, Daniel J Ansel, Susan Lindquist, Luke Whitesell, Elizabeth T Bartom, Mikko Taipale, Marc L Mendillo

Fatecode enables cell fate regulator prediction using classification-supervised autoencoder perturbation

Jul 10, 2024

Cell reports methods

Mehrshad Sadria, Anita Layton, Sidhartha Goyal, Gary D Bader

Single-cell atlas of the human brain vasculature across development, adulthood and disease

Jul 10, 2024

Nature

Thomas Wälchli, Moheb Ghobrial, Marc Schwab, Shigeki Takada, Hang Zhong, Samuel Suntharalingham, Sandra Vetiska, Daymé Rodrigues Gonzalez, Ruilin Wu, Hubert Rehrauer, Anuroopa Dinesh, Kai Yu, Edward L Y Chen, Jeroen Bisschop, Fiona Farnhammer, Ann Mansur, Joanna Kalucka, Itay Tirosh, Luca Regli, Karl Schaller, Karl Frei, Troy Ketela, Mark Bernstein, Paul Kongkham, Peter Carmeliet, Taufik Valiante, Peter B Dirks, Mario L Suva, Gelareh Zadeh, Viviane Tabar, Ralph Schlapbach, Hartland W Jackson, Katrien De Bock, Jason E Fish, Philippe P Monnier, Gary D Bader, Ivan Radovanovic

The TSC22D, WNK, and NRBP gene families exhibit functional buffering and evolved with Metazoa for cell volume regulation

Jul 9, 2024

Cell reports

Yu-Xi Xiao, Seon Yong Lee, Magali Aguilera-Uribe, Reuben Samson, Aaron Au, Yukti Khanna, Zetao Liu, Ran Cheng, Kamaldeep Aulakh, Jiarun Wei, Adrian Granda Farias, Taylor Reilly, Saba Birkadze, Andrea Habsid, Kevin R Brown, Katherine Chan, Patricia Mero, Jie Qi Huang, Maximilian Billmann, Mahfuzur Rahman, Chad Myers, Brenda J Andrews, Ji-Young Youn, Christopher M Yip, Daniela Rotin, W Brent Derry, Julie D Forman-Kay, Alan M Moses, Iva Pritišanac, Anne-Claude Gingras, Jason Moffat

Benchmarking computational variant effect predictors by their ability to infer human traits

Jul 2, 2024

Genome biology

Daniel R Tabet, Da Kuang, Megan C Lancaster, Roujia Li, Karen Liu, Jochen Weile, Atina G Coté, Yingzhou Wu, Robert A Hegele, Dan M Roden, Frederick P Roth

Cyprocide selectively kills nematodes via cytochrome P450 bioactivation

Jul 2, 2024

Nature communications

Jessica Knox, Andrew R Burns, Brittany Cooke, Savina R Cammalleri, Megan Kitner, Justin Ching, Jack M P Castelli, Emily Puumala, Jamie Snider, Emily Koury, J B Collins, Salma Geissah, James J Dowling, Erik C Andersen, Igor Stagljar, Leah E Cowen, Mark Lautens, Inga Zasada, Peter J Roy

Recent Publications

Pagination