Recent Publications

Proteome-scale discovery of protein degradation and stabilization effectors

Mar 21, 2024

Nature

Juline Poirson, Hanna Cho, Akashdeep Dhillon, Shahan Haider, Ahmad Zoheyr Imrit, Mandy Hiu Yi Lam, Nader Alerasool, Jessica Lacoste, Lamisa Mizan, Cassandra Wong, Anne-Claude Gingras, Daniel Schramek, Mikko Taipale

scGREAT: Transformer-based deep-language model for gene regulatory network inference from single-cell transcriptomics

Mar 21, 2024

iScience

Yuchen Wang, Xingjian Chen, Zetian Zheng, Lei Huang, Weidun Xie, Fuzhou Wang, Zhaolei Zhang, Ka-Chun Wong

Transplanted human photoreceptors transfer cytoplasmic material but not to the recipient mouse retina

Mar 15, 2024

Stem cell research & therapy

Margaret T Ho, Kotoe Kawai, Dhana Abdo, Lacrimioara Comanita, Arturo Ortin-Martinez, Yui Ueno, Emily Tsao, Azam Rastgar-Moghadam, Chang Xue, Hong Cui, Valerie A Wallace, Molly S Shoichet

Mapping of DDX11 genetic interactions defines sister chromatid cohesion as the major dependency

Mar 13, 2024

G3 (Bethesda, Md.)

Leanne Amitzi, Ecaterina Cozma, Amy Hin Yan Tong, Katherine Chan, Catherine Ross, Nigel O'Neil, Jason Moffat, Peter Stirling, Philip Hieter

PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data

Mar 13, 2024

Molecular systems biology

Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda Andrews

in silico transcriptome dissection of neocortical excitatory neurogenesis via joint matrix decomposition and transfer learning

Mar 11, 2024

bioRxiv : the preprint server for biology

Shreyash Sonthalia, Guangyan Li, Xoel Mato Blanco, Alex Casella, Jinrui Liu, Genevieve Stein-O'Brien, Brian Caffo, Ricky S Adkins, Joshua Orvis, Ronna Hertzano, Anup Mahurkar, Jesse Gillis, Jonathan Werner, Shaojie Ma, Nicola Micali, Nenad Sestan, Pasko Rakic, Gabriel Santpere, Seth A Ament, Carlo Colantuoni

Proteome-scale movements and compartment connectivity during the eukaryotic cell cycle

Mar 7, 2024

Cell

Athanasios Litsios, Benjamin T Grys, Oren Z Kraus, Helena Friesen, Catherine Ross, Myra Paz David Masinas, Duncan T Forster, Mary T Couvillion, Stefanie Timmermann, Maximilian Billmann, Chad Myers, Nils Johnsson, L Stirling Churchman, Charles Boone, Brenda J Andrews

Cytidine deaminases APOBEC3C and APOBEC3D promote DNA replication stress resistance in pancreatic cancer cells

Mar 6, 2024

Nature cancer

Tajinder Ubhi, Olga Zaslaver, Andrew T Quaile, Dennis Plenker, Pinjiang Cao, Nhu-An Pham, Angéla Békési, Gun-Ho Jang, Grainne M O'Kane, Faiyaz Notta, Jason Moffat, Julie M Wilson, Steven Gallinger, Beáta G Vértessy, David A Tuveson, Hannes L Röst, Grant W Brown

Mutations in myeloid transcription factors and activated signaling genes predict chronic myeloid leukemia outcomes

Mar 6, 2024

Blood advances

Maria Agustina Perusini, Daniela Zackova, TaeHyung Kim, Katia B B Pagnano, Carolina Pavlovsky, Ivana Jeziskova, Anežka Kvetková, Tomas Jurcek, Jaeyoon John Kim, Young Seok Yoo, Seongyoon Yi, Hyewon Lee, Kyoung Ha Kim, Myunghee Chang, Jose-Mario Capo-Chichi, Jessie Medeiros, Andrea Arruda, Mark D Minden, Zhaolei Zhang, Sagi Abelson, Jiri Mayer, Dennis Dong Hwan Kim

Workshop report: the clinical application of data from multiplex assays of variant effect (MAVEs), 12 July 2023

Mar 3, 2024

European journal of human genetics : EJHG

Sophie Allen, Alice Garrett, Lara Muffley, Shawn Fayer, Julia Foreman, David J Adams, Matthew Hurles, Alan F Rubin, Frederick P Roth, Lea M Starita, Leslie G Biesecker, Clare Turnbull

Recent Publications

Pagination