Recent Publications

Mapping of DDX11 genetic interactions defines sister chromatid cohesion as the major dependency

Mar 13, 2024

G3 (Bethesda, Md.)

Leanne Amitzi, Ecaterina Cozma, Amy Hin Yan Tong, Katherine Chan, Catherine Ross, Nigel O'Neil, Jason Moffat, Peter Stirling, Philip Hieter

PIFiA: self-supervised approach for protein functional annotation from single-cell imaging data

Mar 13, 2024

Molecular systems biology

Anastasia Razdaibiedina, Alexander Brechalov, Helena Friesen, Mojca Mattiazzi Usaj, Myra Paz David Masinas, Harsha Garadi Suresh, Kyle Wang, Charles Boone, Jimmy Ba, Brenda Andrews

in silico transcriptome dissection of neocortical excitatory neurogenesis via joint matrix decomposition and transfer learning

Mar 11, 2024

bioRxiv : the preprint server for biology

Shreyash Sonthalia, Guangyan Li, Xoel Mato Blanco, Alex Casella, Jinrui Liu, Genevieve Stein-O'Brien, Brian Caffo, Ricky S Adkins, Joshua Orvis, Ronna Hertzano, Anup Mahurkar, Jesse Gillis, Jonathan Werner, Shaojie Ma, Nicola Micali, Nenad Sestan, Pasko Rakic, Gabriel Santpere, Seth A Ament, Carlo Colantuoni

Proteome-scale movements and compartment connectivity during the eukaryotic cell cycle

Mar 7, 2024

Cell

Athanasios Litsios, Benjamin T Grys, Oren Z Kraus, Helena Friesen, Catherine Ross, Myra Paz David Masinas, Duncan T Forster, Mary T Couvillion, Stefanie Timmermann, Maximilian Billmann, Chad Myers, Nils Johnsson, L Stirling Churchman, Charles Boone, Brenda J Andrews

Cytidine deaminases APOBEC3C and APOBEC3D promote DNA replication stress resistance in pancreatic cancer cells

Mar 6, 2024

Nature cancer

Tajinder Ubhi, Olga Zaslaver, Andrew T Quaile, Dennis Plenker, Pinjiang Cao, Nhu-An Pham, Angéla Békési, Gun-Ho Jang, Grainne M O'Kane, Faiyaz Notta, Jason Moffat, Julie M Wilson, Steven Gallinger, Beáta G Vértessy, David A Tuveson, Hannes L Röst, Grant W Brown

Mutations in myeloid transcription factors and activated signaling genes predict chronic myeloid leukemia outcomes

Mar 6, 2024

Blood advances

Maria Agustina Perusini, Daniela Zackova, TaeHyung Kim, Katia B B Pagnano, Carolina Pavlovsky, Ivana Jeziskova, Anežka Kvetková, Tomas Jurcek, Jaeyoon John Kim, Young Seok Yoo, Seongyoon Yi, Hyewon Lee, Kyoung Ha Kim, Myunghee Chang, Jose-Mario Capo-Chichi, Jessie Medeiros, Andrea Arruda, Mark D Minden, Zhaolei Zhang, Sagi Abelson, Jiri Mayer, Dennis Dong Hwan Kim

Workshop report: the clinical application of data from multiplex assays of variant effect (MAVEs), 12 July 2023

Mar 3, 2024

European journal of human genetics : EJHG

Sophie Allen, Alice Garrett, Lara Muffley, Shawn Fayer, Julia Foreman, David J Adams, Matthew Hurles, Alan F Rubin, Frederick P Roth, Lea M Starita, Leslie G Biesecker, Clare Turnbull

Metformin reduces the clonal fitness of Dnmt3a^R878H hematopoietic stem and progenitor cells by reversing their aberrant metabolic and epigenetic state

Feb 26, 2024

Research square

Mohsen Hosseini, Veronique Voisin, Ali Chegini, Angelica Varesi, Severine Cathelin, Dhanoop Manikoth Ayyathan, Alex C H Liu, Yitong Yang, Vivian Wang, Abdula Maher, Eric Grignano, Julie A Reisz, Angelo D'Alessandro, Kira Young, Yiyan Wu, Martina Fiumara, Samuele Ferrari, Luigi Naldini, Federico Gaiti, Shraddha Pai, Aaron D Schimmer, Gary D Bader, John E Dick, Stephanie Z Xie, Jennifer J Trowbridge, Steven M Chan

Defining Transcriptomic Heterogeneity between Left and Right Ventricle-Derived Cardiac Fibroblasts

Feb 23, 2024

Cells

Michael Bradley Dewar, Fahad Ehsan, Aliya Izumi, Hangjun Zhang, Yu-Qing Zhou, Haisam Shah, Dylan Langburt, Hamsini Suresh, Tao Wang, Alison Hacker, Boris Hinz, Jesse Gillis, Mansoor Husain, Scott Patrick Heximer

Integrating single-cell and spatially resolved transcriptomic strategies to survey the astrocyte response to stroke in male mice

Feb 21, 2024

Nature communications

Erica Y Scott, Nickie Safarian, Daniela Lozano Casasbuenas, Michael Dryden, Teodora Tockovska, Shawar Ali, Jiaxi Peng, Emerson Daniele, Isabel Nie Xin Lim, K W Annie Bang, Shreejoy Tripathy, Scott A Yuzwa, Aaron R Wheeler, Maryam Faiz

Recent Publications

Pagination